PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7863_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 190aa    MW: 21669.7 Da    PI: 4.7045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7863_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033170186117
                 EEETTTTEEESSHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                 ++Cp+C k+F+r  n++
  RrC7863_p3 170 FSCPICFKTFNRYNNMQ 186
                 89*********988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.5E-4170185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSNPAYSNLL NNGFDNTNFN SSTSRSYIYN SHNCFYYPNT TNPNYMAPTT STFPNSPPLR  60
EALPLLSLSP IRHQEQQDQH YFMDTDQISS SKFLNYPHDV TVDLHLGLPN CGVGGSYIAP  120
DATTDEQDDD QGVEVTVDFH LHDDDDGYLH RGHHYWIPTP DQILMGPTQF SCPICFKTFN  180
RYNNMQVPLH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0060851e-115AC006085.1 Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete sequence.
GenBankCP0026841e-115CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467444.11e-135PREDICTED: zinc finger protein WIP5-like, partial
SwissprotQ8W0311e-84ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A078GBV91e-108A0A078GBV9_BRANA; BnaA06g02430D protein
STRINGBo6g025920.11e-108(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.14e-87WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]