PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7863_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 190aa MW: 21669.7 Da PI: 4.7045 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 170 | 186 | 1 | 17 |
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp+C k+F+r n++ RrC7863_p3 170 FSCPICFKTFNRYNNMQ 186 89*********988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.5E-4 | 170 | 185 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSNPAYSNLL NNGFDNTNFN SSTSRSYIYN SHNCFYYPNT TNPNYMAPTT STFPNSPPLR 60 EALPLLSLSP IRHQEQQDQH YFMDTDQISS SKFLNYPHDV TVDLHLGLPN CGVGGSYIAP 120 DATTDEQDDD QGVEVTVDFH LHDDDDGYLH RGHHYWIPTP DQILMGPTQF SCPICFKTFN 180 RYNNMQVPLH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006085 | 1e-115 | AC006085.1 Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 1e-115 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467444.1 | 1e-135 | PREDICTED: zinc finger protein WIP5-like, partial | ||||
Swissprot | Q8W031 | 1e-84 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | A0A078GBV9 | 1e-108 | A0A078GBV9_BRANA; BnaA06g02430D protein | ||||
STRING | Bo6g025920.1 | 1e-108 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 4e-87 | WIP domain protein 5 |
Publications ? help Back to Top | |||
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