PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7850_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 726aa    MW: 79960.5 Da    PI: 6.7311
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7850_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-085193347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
       RrC7850_p1 51 AWTHQEEESFFTALRQVGKN-FAKITSRVQ-SKNKDQVRHYYYRL 93
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-114398IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-54696IPR009057Homeodomain-like
PROSITE profilePS5129313.1754798IPR017884SANT domain
SMARTSM007174.6E-64896IPR001005SANT/Myb domain
PfamPF002491.9E-65193IPR001005SANT/Myb domain
CDDcd001671.57E-55194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MQAEKEVTLS THGPIEEGLI SNQNSNPNIA SSVSISVAQF PAKKPTRQWA AWTHQEEESF  60
FTALRQVGKN FAKITSRVQS KNKDQVRHYY YRLVRRMNKL LGPELSLDAK NPKDTNAAML  120
RWWSLLEKYS CKASKLHLKP RRFKLFLEAL EHQLLKDRRK SSRKRACHGE SFSSASLGNI  180
SSHSRERGLD NSPFKLILCD SQNVRPGRAS TKHGESLGVR IGDEKEDTAV GRCGRRRKQA  240
VLPSSAGLRK WEKAAIDGVS LVADAAEHLE RTSIDKDMDV QKDLGPTRYL TGKSPLSLPS  300
SGEVPLNDAN MLFSAKLKLQ LFPIDESTRR SLEVDKHNPH LELTLSNRKK ISSVLEHLNR  360
KWGSSSCACG ELMLFPYNAR KETLPLHQRW TNDSFLSAAE VYSMVGRPSL FRLRYGWFVQ  420
DASGSFISQV PTSASYPPLE DNMNVDDANE VNMLLTESGP LSKHSTSEQA TSVVCAAGDR  480
PAETRDNYEP ASATISPFEP LSSGNALSAG AWADSLTNIS IGDLLSEAPD DIDRDCVDPP  540
ATEGSHCLLR DVSFASDSFD AAIAAHILRH QNKPSGLISM TSGSSSLWDD EDTRDAFSFQ  600
KNRHAKSSPG GTGRVNGELT QVVEATSGDE GPCNVPDQQG DPMEEGPTDL HTIDSPGKTI  660
YGLADVYWPD SLGPLDLDIR SSKYTEDLNL SDSLGGLSRL IATSLDAFQN CSLFGFDSKK  720
DKSNMV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441744.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_018441745.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A0D3BRC50.0A0A0D3BRC5_BRAOL; Uncharacterized protein
STRINGBo4g031010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1