PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC773_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 574aa    MW: 64577.8 Da    PI: 8.2883
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC773_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.9e-131163248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     + W+t+E++ll++av+++G ++W+++a+++        ++t+ +c+ ++++++
        RrC773_p1 11 QTWSTWEELLLACAVRRHGVDSWDSVAAEIHkqnsssRTLTASDCRRKYNDLK 63
                     68************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.644563IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-5764IPR009057Homeodomain-like
SuperFamilySSF466892.61E-6965IPR009057Homeodomain-like
SMARTSM007178.1E-9965IPR001005SANT/Myb domain
PfamPF002497.9E-131163IPR001005SANT/Myb domain
CDDcd001671.58E-61263No hitNo description
SMARTSM002971.8E-13103351IPR001487Bromodomain
SuperFamilySSF473704.71E-17252347IPR001487Bromodomain
CDDcd043694.09E-17254346No hitNo description
PfamPF004399.2E-12258336IPR001487Bromodomain
PROSITE profilePS5001413.575259332IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-14274368IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MAKPENEENN QTWSTWEELL LACAVRRHGV DSWDSVAAEI HKQNSSSRTL TASDCRRKYN  60
DLKRRFSSPE GETVSEISWW LEELRKLRVD ELRREVERYD VSISSLQMKV KRLEDEREKE  120
EAEKVAGSSD LVKPAETGEN HDVPVIEPNR EIDESVKEEP NRIGGDGTEE KPIREDSGRG  180
SCESGAKDSE RGDSVVREGN DSPELVEAKE TSDVQSSASL PRKEETVGHD QPDNEDQSVA  240
VNKTVVESGP LIGFIEILRS RPIGSHFWRR LESQLQETPE YERIIRQHID LDQIRTRVDE  300
GYYQSSKTKF FRDLLLLINN AKVFYGERSP ESNSATQLHE LIKKQMTALK TSNQTSPPKD  360
EPVVTSKEEL TLLSLKPKVS VSVIKACRKR SSLAVRSSST EPLKKKTKVV PTTDENEKKQ  420
VSETEEEDET TDKDEEPIVS KKTPRGRTTT SLAKKVGTRN VKSSLDDGDV SEQKKSDQEK  480
KGKSTKVGSK KQSAASFLKR MKGAETVPET VKDDSSSGKK GAEQRRSTTK HEKVVAGQKR  540
TLAAKKNTSA GSKREASEKE EGSSTRPKKR TRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463686.10.0PREDICTED: titin homolog
TrEMBLA0A3P6GCV60.0A0A3P6GCV6_BRAOL; Uncharacterized protein
STRINGBo8g092340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-172DNA-binding bromodomain-containing protein