PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC770_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 354aa    MW: 40127.3 Da    PI: 8.8052
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC770_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.6e-124391155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++ykGV +   +g W A+I+       +kr++lg+f +a eAa+a++ a  kl+g
  RrC770_p3 43 TKYKGVVQQQ-NGHWGAQIYAD-----HKRIWLGTFKSAAEAAAAYDSASIKLRG 91
               69****9888.8******9993.....4************************998 PP
2B389.91.9e-28177282190
                EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                f k+ltpsdv+k++rlv+pkk+a +h               gg    +++++++d+  r+W+++++y+k+s+++v+t+GW++Fvk+++Lke+D++vF+  
  RrC770_p3 177 FNKELTPSDVGKLNRLVIPKKHAVRHlpfitdereegetggGGGAVDDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNGFVKEKNLKEKDVIVFYTC 276
                89*****************************99988888885555699**************************************************66 PP

                SS.SEE CS
         B3  86 gr.sef 90 
                +  s+f
  RrC770_p3 277 DVpSSF 282
                555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-64391IPR001471AP2/ERF domain
CDDcd000188.00E-1343103No hitNo description
Gene3DG3DSA:3.30.730.103.1E-1744101IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1544103IPR016177DNA-binding domain
PROSITE profilePS5103217.67544101IPR001471AP2/ERF domain
SMARTSM003801.8E-1844107IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.5E-31172275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-27175276IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-24176283No hitNo description
SMARTSM010195.7E-19177288IPR003340B3 DNA binding domain
PfamPF023621.7E-25177282IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97177290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNILKEETSR HEANTRTDTS SVSSDLRLAK RMKPTTVSPT ATTKYKGVVQ QQNGHWGAQI  60
YADHKRIWLG TFKSAAEAAA AYDSASIKLR GFDANSHRNF PWSEITVHEP DFQNNHTTEA  120
VLNMIRDSTY VKKFSDHLQV RSQMVAIANI NMVGSKQSLG GGGVQESTKC FSCTELFNKE  180
LTPSDVGKLN RLVIPKKHAV RHLPFITDER EEGETGGGGG AVDDVEVVFY DRAMRQWKFR  240
YCYWKSSQSF VFTRGWNGFV KEKNLKEKDV IVFYTCDVPS SFKTLEGQSN SFLMIDVDYF  300
TDKGSVEPKE VNKMVHNVSE EEMKTKNFFS SKLEEETKSE VKKGGFMLFG VRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-2517627313100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488108.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A3P5YW630.0A0A3P5YW63_BRACM; Uncharacterized protein
TrEMBLA0A3P6FAH60.0A0A3P6FAH6_BRAOL; Uncharacterized protein
STRINGBo5g081270.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-164RAV family protein