PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7688_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 294aa    MW: 35095.5 Da    PI: 8.8463
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7688_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.83.4e-2444126186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+ +e+++Li++r e+++++ ++k++k lWe vs+kmr++ f rsp+qCk+kw+nl +r+k  ++++ +    +++++++fd++e
  RrC7688_p2  44 QWSLEETKELIAVRGELDQTFMETKRNKLLWEVVSNKMRDKSFLRSPEQCKCKWKNLVTRFKGSETMDAES---ARQQFRFFDNME 126
                 7********************************************************************84...45689*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.9E-441103IPR001005SANT/Myb domain
CDDcd122033.09E-2143108No hitNo description
PfamPF138371.1E-1844126No hitNo description
PROSITE profilePS500907.51545101IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDGHQHQLHH LQSLNKYQHH VHPQSQTPEI ASPATVAAGE RFPQWSLEET KELIAVRGEL  60
DQTFMETKRN KLLWEVVSNK MRDKSFLRSP EQCKCKWKNL VTRFKGSETM DAESARQQFR  120
FFDNMEIIFT SRMQKMIWVE SEGREGVSGT TRKRCHSEQF SSDEEEKVNE ELVDISNDPK  180
ISNPKKNMVK KQKGGISNSN TSNSVREVLV EFMRHQSRME TEWRERWEGR EKERAEKEQE  240
WRRKMAEIEK ERVEMERMWR DREEQRRSRE EIRAEKRDSL INALLAKLTR DGSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A7e-1340122284DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133240.11e-166PREDICTED: trihelix transcription factor GT-3b-like
RefseqXP_013740623.11e-166trihelix transcription factor GT-3b-like
SwissprotO804501e-115TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLM4C7681e-165M4C768_BRARP; Uncharacterized protein
STRINGBra000046.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-96Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]