PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7687_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 304aa    MW: 34994.8 Da    PI: 10.5504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7687_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000267092223
                EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                +C+ Cgk F+    L++H +t H
  RrC7687_p3 70 RCGECGKGFRYEKCLRNHTQTmH 92
                7******************9988 PP
2zf-C2H211.10.0012261283123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C  C ++Fs+   L  H+ +H
  RrC7687_p3 261 HRCRVCERVFSTYQALGGHQTVH 283
                 79**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.126992IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.41E-86991No hitNo description
PROSITE profilePS5015711.6766997IPR007087Zinc finger, C2H2
PROSITE patternPS0002807192IPR007087Zinc finger, C2H2
SuperFamilySSF576675.41E-8256283No hitNo description
SMARTSM003550.074261283IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66261288IPR007087Zinc finger, C2H2
PfamPF139121.2E-7261284IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEDHQEFEKP IFELHPRKAR SSRNKKKNGL GESMNHHHYE EIFCYYGLRE SPKRRTTTQK  60
SIRIKKRLIR CGECGKGFRY EKCLRNHTQT MHSLEEKKKK KKKKSERDLL CIFRSDVQRR  120
KRSKRVSRYK KILPLPSVSS SSSASSSTFA KDGELLQVAE SLIMLSKSGH ALFSNQRECE  180
DEQKLVGKLT DGSLSNRRSK DESGQLKQVG AESFGEQVRL DRKSLDDMLK KAETETGQKL  240
GGQEAVFEAS NGAASKGNNE HRCRVCERVF STYQALGGHQ TVHRMKNNSD KPKHEMQRRV  300
SSRC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103KKKKKKK
2101121KKKSERDLLCIFRSDVQRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488337.11e-173PREDICTED: uncharacterized protein LOC108858999
TrEMBLM4C9Z71e-119M4C9Z7_BRARP; Uncharacterized protein
STRINGBra001026.1-P1e-119(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.19e-12C2H2 family protein