PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7661_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 346aa    MW: 38466.6 Da    PI: 10.5127
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7661_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix34.55.5e-112702086
    trihelix 20 rlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk++k +  ++  + +s++++fd+l+
  RrC7661_p2  2 ELSRGNLKQKHWKEVADIVsgmeDYGKTAKTDIQCKNRIDTVKKKYKQEKVRIASG--GGRSRWVFFDKLD 70
                57899**************99877788899************************97..56668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.6E-15572No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MELSRGNLKQ KHWKEVADIV SGMEDYGKTA KTDIQCKNRI DTVKKKYKQE KVRIASGGGR  60
SRWVFFDKLD RLIGSTAKIP AIGSPGGGLS KIPMGIPMDS RSNVYHQQAK APPFNNLDRL  120
IGATARVTAA SFGGGGGGGG GGGGNVPMGI PMSSRSSPFG QQVRTLPQQQ QVRTLSQQQQ  180
GRTLPQQQPQ GMMVKRCSES KRWRFSKRNA TDSDSESDAP MSDDDDSGDS LPPPPLSKRL  240
KTEEKKMMKQ EGGSKWRELS RAIMRFGEAY EQTENAKLQQ VVEMEKERMK FLKELELQRM  300
QFFVKTQLEI SEIKQAGRRM GNNTSDDHHK SKNNMNAIVS NDDVGN
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490355.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A3N6Q5U20.0A0A3N6Q5U2_BRACR; Uncharacterized protein
STRINGBo3g065930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-149sequence-specific DNA binding transcription factors