PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7529_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 279aa MW: 30492.6 Da PI: 7.3406 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 146 | 195 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 gy+GVr+++ +g+++AeIrdp+ r +r++lg+f tae+Aa+a+++a+ ++g RrC7529_p1 146 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAEDAARAYDRAAIGFRG 195 8********.**********83....57*********************987776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.68E-21 | 146 | 203 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.591 | 146 | 203 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-36 | 146 | 209 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-12 | 146 | 194 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.47E-21 | 147 | 202 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 147 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 147 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-11 | 169 | 185 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MHYPNNRPDF VGAPASDHDS TRNRYQQKEQ LSPEQELSVM VSALQHVLSG GKETTTPYQG 60 FSSNSTVISA GMPRSDSDTC QVCRIDGCLG CNYFFAPTQK IEKKQVVEEA VTSNSSGRRE 120 SSVAAAAKGK KAEGGKVRKR KNKKNGYRGV RQRPWGKFAA EIRDPKRATR VWLGTFETAE 180 DAARAYDRAA IGFRGPRAKL NFSFLDYTST TTTASSVPAE DVGTNASTSV SATESVEAEQ 240 WRGDGGVDCD DMEEYLRMVM DFGNGDSSDS GNTIADMFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-23 | 143 | 204 | 2 | 64 | ATERF1 |
3gcc_A | 1e-23 | 143 | 204 | 2 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480360.1 | 1e-166 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 1e-109 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | M4DMC3 | 1e-143 | M4DMC3_BRARP; Uncharacterized protein | ||||
STRING | Bra017656.1-P | 1e-144 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5469 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 4e-94 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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