PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC744_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 317aa    MW: 34901.7 Da    PI: 5.6272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC744_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10205253355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  RrC744_p2 205 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 253
                58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.76E-11200257No hitNo description
SuperFamilySSF474593.4E-17200270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-17203270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7205253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGGESNEGEM GLNHGHDPSR VGSTTSMPLY AKADPFFSSA DWDPVVNVGG FSSSHYSSVV  60
MDNPGMSCFT HYQPGSGYPD MPTSLLPFVD CGDGGGGHFL GSDKNGDSVG RLIRAGESHD  120
QVSDDGVLGV SPNRKRRQAE AESQRNKKAV EEFQEDPQRG SDQSQKKHKD GQSKETMNNK  180
ESSQSEEAPK ENYIHMRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV  240
MLDEIINYVQ SLQQQVEFLS MKLATVNPEI NIDIDRIIAK DTALESELQS LYQMGFVSNP  300
STMSSFSPNN GRLKPEL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486323.10.0PREDICTED: transcription factor bHLH74-like
RefseqXP_018492018.10.0PREDICTED: transcription factor bHLH74-like
SwissprotQ6NKN91e-176BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A0D3DY790.0A0A0D3DY79_BRAOL; Uncharacterized protein
STRINGBo8g110780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-176bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]