PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC739_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 268aa    MW: 30868.9 Da    PI: 9.2794
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC739_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1336118286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W+++ + +L++a   +  rl+ g+l++++W+evs+++     ++   ++ +qCk++++ l+k+yk++k+  +       s +++fd+l+
  RrC739_p5  36 WSEDATATLLQAWGHRFVRLNFGNLRQNDWKEVSDAVnsshGDGRRPKTDTQCKSRIDTLKKKYKAEKAKLSP------SAWRFFDHLD 118
                *************************************95544444556778*****************99986......57*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2334119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
METTTPPSPA TQSKPQQPHS IGSHRQPSAV GREDWWSEDA TATLLQAWGH RFVRLNFGNL  60
RQNDWKEVSD AVNSSHGDGR RPKTDTQCKS RIDTLKKKYK AEKAKLSPSA WRFFDHLDVL  120
IGPISKKPAE EVVKSETLKP YLSLTGAKYR ESSFEQDEEE EEAGDVEGFV ARKHPRVEEG  180
DLSEDSARKE LARTIVKLGE VYERVEVRKQ KMMVELEKQR MEVVKELELQ RMNMLMEMQF  240
ELEKSKNRKR GDGSVRHLVE RGLHLGKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892010.0AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467560.11e-151PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A0D3EHL11e-128A0A0D3EHL1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EDP81e-128A0A3P6EDP8_BRAOL; Uncharacterized protein
STRINGBo9g177060.11e-129(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-96sequence-specific DNA binding transcription factors