PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC733_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 236aa MW: 25723.4 Da PI: 6.0741

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC733_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.8	2.1e-37	27	83	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++++ RrC733_p3 27 PSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRTK 83 58***************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-21	23	73	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.63	27	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	28	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MERTEALTSS FIWRPNANAN ANAEITPSCP RCGSSNTKFC YYNNYSLTQP RYFCKGCRRY 60 WTKGGSLRNV PVGGGCRKSR RTKSSSSNSK TGVTASSCSS GGGSPNIDLA LVYANFLNPK 120 PDEPTLQETC DLATGVSMKP SWSMDIGDHY DHQVEHIVEE CGYNGLPPFP GEELLSIDTN 180 SVWSDALLIG HHHVEVGGVS PARTVHEPVV HFADESNDST NFLLGSWSPF DFSTDG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018482482.1	1e-149	PREDICTED: dof zinc finger protein DOF3.5-like
Swissprot	Q9SVC5	1e-140	DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBL	A0A3P6AC65	1e-147	A0A3P6AC65_BRACM; Uncharacterized protein (Fragment)
STRING	Bo7g102590.1	1e-147	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9141	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	1e-126	Dof family protein