PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC731_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 287aa MW: 31669.2 Da PI: 6.9627 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 141 | 185 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky RrC731_p2 141 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 185 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.592 | 33 | 86 | IPR017884 | SANT domain |
SMART | SM00717 | 3.6E-7 | 34 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.15E-9 | 37 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.11E-6 | 37 | 83 | No hit | No description |
PROSITE profile | PS51294 | 20.491 | 134 | 190 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.34E-17 | 136 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-17 | 137 | 189 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-13 | 138 | 188 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-12 | 138 | 184 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-11 | 141 | 186 | No hit | No description |
Pfam | PF00249 | 4.9E-13 | 141 | 185 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
MEILRPATTS HVSGGNWLME ETKSNVPPVA ASSDATTWTV AENKAFENAL AVYDDNTPDR 60 WQKVAAAIPG KTVSDVIKQY NDLEADLSSI EAGLIPVPGY ITSSFTLDWG GCNGFKPGHP 120 VGNRRSPAGR TPELERKKGV PWTEEEHKLF LMGLKKYGKG DWRNISRNFV ITRTPTQVAS 180 HAQKYFIRQH SGGKDKRRAS IHDITTVNLE DQASLETNKS SIVGREQRSR LDAFPWSQTD 240 NNGTHADAFN ITIGNAISGV HSYGQALLGP FNTADSCYDE QNTMYQL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-17 | 38 | 103 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK118891 | 0.0 | AK118891.1 Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07. | |||
GenBank | AY519533 | 0.0 | AY519533.1 Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds. | |||
GenBank | BT005473 | 0.0 | BT005473.1 Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018473188.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-101 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M4CRA0 | 0.0 | M4CRA0_BRARP; Uncharacterized protein | ||||
STRING | Bra006741.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1228 | 27 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58900.1 | 0.0 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
---|---|---|---|
|