PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC7044_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 148aa MW: 16641.5 Da PI: 10.2231 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.4 | 1.6e-12 | 54 | 95 | 16 | 55 |
AP2 16 vAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +AeIr+p++ +g +kr +lg+f+ta eAa a+++a+ +++g RrC7044_p2 54 RAEIREPVNqRGgNSKRLWLGTFDTAAEAALAYDRAASAMYG 95 69****888777677**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.369 | 41 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-14 | 48 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-13 | 54 | 105 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.80E-18 | 54 | 104 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-18 | 55 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-6 | 62 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MEKEDNVSNQ SSSASVEPSR RRRRRRVAEP VDTTLSKWVK EEEGLKKVRR VQARAEIREP 60 VNQRGGNSKR LWLGTFDTAA EAALAYDRAA SAMYGRYARL NFPDRLGNCP GGEMNDKPGS 120 SRSYWLETSN VSETGNSLID KKDGKGYL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 25 | RRRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634722.1 | 1e-67 | PREDICTED: dehydration-responsive element-binding protein 2E | ||||
Refseq | XP_013704026.1 | 1e-67 | dehydration-responsive element-binding protein 2E-like | ||||
Refseq | XP_013705373.1 | 1e-67 | dehydration-responsive element-binding protein 2E-like | ||||
Swissprot | O80917 | 2e-28 | DRE2E_ARATH; Dehydration-responsive element-binding protein 2E | ||||
TrEMBL | A0A078JBN6 | 2e-66 | A0A078JBN6_BRANA; BnaC04g53380D protein | ||||
STRING | Bo4g027470.1 | 5e-67 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14249 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 6e-22 | ERF family protein |
Publications ? help Back to Top | |||
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