PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6925_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 234aa MW: 25534.8 Da PI: 4.747

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6925_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.9	7.2e-43	59	158	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ RrC6925_p1 59 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQV 157 7**********************************************************************************************9986 PP DUF260 100 e 100 e RrC6925_p1 158 E 158 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.323	58	159	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-42	59	156	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MLKVESIGST STATPTSSAV AVVSASETTT PVSSPSPTSS PPPSLSPQQP PQPPVVLSPC 60 AACKILRRRC AEKCVLAPYF PPTDPAKFTI AHRVFGASNI IKFLQELPES QRTDAVNSMV 120 YEAGARMRDP VYGCAGAIYH LQRQVSELQA QLAKTQVELV SMHLQRSDLL ELLYKMEQTK 180 LSAQEGHQNM SFESSFDSGD ELISSPDEVT NDLGFLEDTN NNNSSMSWWD PLWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-41	51	160	3	112	LOB family transfactor Ramosa2.1
5ly0_B	5e-41	51	160	3	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473840	0.0	AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434197.1	1e-174	PREDICTED: LOB domain-containing protein 11-like
Swissprot	Q9SK08	1e-124	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A291LQZ0	1e-132	A0A291LQZ0_BRARR; Transcription factor LBD11
TrEMBL	A0A397YSL0	1e-132	A0A397YSL0_BRACM; Uncharacterized protein
TrEMBL	A0A397ZLR9	1e-132	A0A397ZLR9_BRACM; Uncharacterized protein
TrEMBL	M4D634	1e-132	M4D634_BRARP; Uncharacterized protein
STRING	Bra011942.1-P	1e-133	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-115	LOB domain-containing protein 11