PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC6879_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 183aa MW: 21019.4 Da PI: 7.8875 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 8e-17 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ RrC6879_p1 2 TPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.372 | 1 | 47 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-12 | 1 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-12 | 1 | 43 | No hit | No description |
SuperFamily | SSF46689 | 5.62E-13 | 2 | 48 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-15 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MTPQEERLVL ELHAKWGNRW SKIARKLPGR TDNEIKNYWR THMRKKTQEK KRHVSPSSSC 60 SNCCSSSMTT TNTQDVSFQS SGKVSFYDTG GNSEMNQETK DGYSMDDIWK EIDHSAVKVT 120 QPVKDIYLEQ SYCLSYPTLA SPSWESSLDS VWKMDADKSK MSSFADDQFP FCFQHSRSPW 180 ASG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC966738 | 0.0 | KC966738.1 Brassica napus MYB transcription factor 48 (MYB48.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436505.1 | 1e-134 | PREDICTED: transcription factor MYB48 isoform X2 | ||||
Swissprot | Q9LX82 | 2e-94 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A0A7BW75 | 1e-110 | A0A0A7BW75_BRANA; MYB transcription factor 48 | ||||
TrEMBL | A0A0D3BHG5 | 1e-110 | A0A0D3BHG5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BGL9 | 1e-110 | A0A3P6BGL9_BRAOL; Uncharacterized protein | ||||
TrEMBL | W6ECK3 | 1e-110 | W6ECK3_BRAJU; MYB1-4 | ||||
STRING | Bo3g130340.1 | 1e-111 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46130.2 | 1e-95 | myb domain protein 48 |
Publications ? help Back to Top | |||
---|---|---|---|
|