PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6770_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 234aa MW: 26455.8 Da PI: 5.4153 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135.1 | 4.6e-42 | 5 | 135 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + GfrF Pt++elvv+yL++++egk+ ++++vi+ +di++veP++Lp+ ++++++++w+fF++ ++++a+g r++r+t sgyWkatg+ +v+sk RrC6770_p4 5 TTGFRFYPTEDELVVFYLRNQLEGKSgDSMHRVIPVLDIFEVEPSHLPNiageRCRGDTEQWFFFVPIQEREARGGRPSRTTGSGYWKATGSPGPVFSK 103 68***********************96667778***************656666666888*************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +++ +g+kkt+vfy+g+ap+g kt+W m+ey+ RrC6770_p4 104 DNRMIGVKKTMVFYTGKAPTGGKTKWKMNEYK 135 *******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-45 | 3 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.595 | 4 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-22 | 6 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEDLTTGFRF YPTEDELVVF YLRNQLEGKS GDSMHRVIPV LDIFEVEPSH LPNIAGERCR 60 GDTEQWFFFV PIQEREARGG RPSRTTGSGY WKATGSPGPV FSKDNRMIGV KKTMVFYTGK 120 APTGGKTKWK MNEYKALDDR DNISTIPKLR HEFSLCRVYI TSGSSRAFDR RPVGVPQTGR 180 MLTNDVAVAE TSFFVGSSPE ISMSGGEHVD LSVDTEMVDG LTEPIWEWEQ LNWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-32 | 4 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-32 | 4 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-32 | 4 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-32 | 4 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-32 | 4 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-32 | 4 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-32 | 4 | 166 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-32 | 4 | 166 | 20 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018474504.1 | 1e-171 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-143 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A078JT76 | 1e-164 | A0A078JT76_BRANA; BnaCnng60710D protein | ||||
TrEMBL | A0A0D3B2A7 | 1e-164 | A0A0D3B2A7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ACP5 | 1e-164 | A0A3P6ACP5_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g016870.1 | 1e-164 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-134 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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