PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6748_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 599aa    MW: 67159.7 Da    PI: 5.5199
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6748_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.4e-13336386248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 
                      + W t+E++ll +avk++G+++W+++a+++g    +  ++ +c +++q+++
       RrC6748_p2 336 QVWGTWEELLLTCAVKRHGSKDWDSVAKEVGsrssLDASAHDCSLKYQDLR 386
                      68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056785.3E-94974IPR008889VQ
SuperFamilySSF482566.41E-19151270IPR002020Citrate synthase
PfamPF002851.2E-8175270IPR002020Citrate synthase
Gene3DG3DSA:1.10.580.109.5E-15177270IPR016142Citrate synthase-like, large alpha subdomain
Gene3DG3DSA:1.10.10.601.6E-4331370IPR009057Homeodomain-like
SuperFamilySSF466892.37E-6332386IPR009057Homeodomain-like
SMARTSM007173.0E-6334388IPR001005SANT/Myb domain
PfamPF002491.1E-11336385IPR001005SANT/Myb domain
CDDcd001674.32E-7338385No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046912Molecular Functiontransferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MERSSMKAEY DLDHPHQSFY GDYSKPLVPK NKNSQIITKI KPKIRIIHIF APEIINTDVK  60
NFRTLVQSLT GKPEITKTSP KEKTNIPAPP PPPQESSHEH TGELVNNILG SHVVKDEWES  120
GSNTNTYFDL DGLIDLDEDD NIFSSRWFDL QGILFRGMSI PECQKVLPEE LSKIATDDYV  180
YKAIDALPSI SHPMTQFASG VMLWLSRFWE STFEDALNLI ARVPVLAHMF IGGCIIPLDD  240
SLDYGANFSH MLGFDSPHMK ELMRLYITMH SCIKWFSWAL HGLANQASGT EKMMREEDMA  300
VTSNGMNDDD YINNNINNSC SGSDNNRSAD ANQISQVWGT WEELLLTCAV KRHGSKDWDS  360
VAKEVGSRSS LDASAHDCSL KYQDLRRRFD DDGGQGNTDD RDGEIVERLR SLRVAELRRE  420
VQRRGESILS LQLKVKRLEE ENNGDEGDDK PDLEDDSKAV RSLNNETEPV RLNRETTESD  480
HRSMNESNST ASVADHERLN GDNSRNPDPA HKAADEGTVS RRSGMSHSGE LGESGTSTGP  540
RKRTKRGQKY ISGEDSSIRG GSGGNIKTAG NKPQPLIEII KLIRSHPRGS VFESRLRSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1al6_A2e-1815131862311CITRATE SYNTHASE
1amz_A2e-1815131860309CITRATE SYNTHASE
1csh_A2e-1815131860309CITRATE SYNTHASE
1csi_A2e-1815131860309CITRATE SYNTHASE
1csr_A2e-1815131860309CITRATE SYNTHASE
1css_A2e-1815131860309CITRATE SYNTHASE
6csc_A2e-1815131862311CITRATE SYNTHASE
6csc_B2e-1815131862311CITRATE SYNTHASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892971e-114AC189297.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB027O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487154.10.0PREDICTED: bromodomain and WD repeat-containing protein 1-like
RefseqXP_018487155.10.0PREDICTED: bromodomain and WD repeat-containing protein 1-like
TrEMBLA0A0D3DUI51e-171A0A0D3DUI5_BRAOL; Uncharacterized protein
STRINGBo8g094870.11e-172(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-76DNA-binding bromodomain-containing protein