PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6736_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 318aa    MW: 35278.2 Da    PI: 6.5955
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6736_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.53.8e-18230263134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  RrC6736_p1 230 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 263
                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.4E-901317IPR016679Transcription factor, GATA, plant
SMARTSM004017.2E-16224274IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.728224260IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15228287No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14228261IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.73E-14229276No hitNo description
PROSITE patternPS003440230255IPR000679Zinc finger, GATA-type
PfamPF003204.1E-16230263IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MFGQSFPDDL DCGNFFDNMD DILDFPGCDM DVGFNIGDSD SFPNIWTTHQ DTWPAASDPL  60
FSSNAKSDSS PELYVPFEDI VKVEKPASFV EESLVEKKED TFSTNTDSSS SHSHFRSSSP  120
VSVLESSSSS SQTTNTTSLV LSGKHGRPRT KRPRPPVQEM DRANVCGADS RLIVRIPKQF  180
LSDHSKMITK KKKKKAKVIS SSSSSGIDLE TNGSNNVDSY DSEQHPVRKC MHCEVTKTPQ  240
WRLGPMGPKT LCNACGVRYK SGRLFPEYRP ANSPTFTPAL HSNSHKKVAE MRSKRCSYAN  300
EENDLQDLIP NNAYIGVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150154KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4121070.0AF412107.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
GenBankAK3175030.0AK317503.1 Arabidopsis thaliana AT3G54810 mRNA, complete cds, clone: RAFL23-14-K23.
GenBankAY0780290.0AY078029.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491420.10.0PREDICTED: GATA transcription factor 8
SwissprotQ9SV301e-163GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A3P5YRV10.0A0A3P5YRV1_BRACM; Uncharacterized protein
STRINGBra007099.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-142GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]