PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6701_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 454aa    MW: 50690.6 Da    PI: 8.9878
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6701_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00074396418123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++F++   L  H r+H
  RrC6701_p3 396 HECPICFRVFKSGQALGGHKRSH 418
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-5234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.29E-6636No hitNo description
PfamPF139123.5E-41034IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3671037IPR007087Zinc finger, C2H2
SMARTSM003550.551032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.15790117IPR007087Zinc finger, C2H2
SMARTSM003550.01590112IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-491114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.1E-491112IPR007087Zinc finger, C2H2
SuperFamilySSF576675.99E-791112No hitNo description
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576675.99E-7391418No hitNo description
PfamPF139123.9E-10396418IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974396418IPR007087Zinc finger, C2H2
SMARTSM003550.14396418IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280398418IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEEHFKERKF VCKFCSRRFA CGKSLGGHIR THMSKDNSAD SDDDEHSNKL RIDENGGQAS  60
YGLRENPKKN KKFVVQRDMM MAQQHQQQLL RCRECGKGFA SSKALCGHMA CHTEREKTVM  120
DSQSDTEASS SPIRRRSKRA VKHHHHHHKA DDAFVDGGSI MDQSDSVASS DASEIETEQE  180
ETALSLMMLS RDSSFKKGGH NLVFVNSRAE SSDNNSVILE TKSSSGEQLK ILKVKNVEEL  240
CKKDKLGGVD NGDVLYDSDN SDSGYFRNGP KKLDSDVTVD GFLKNSGFNN KAAMGFNSYT  300
TKEDKSLNRF RKEWSVSGSG SGSGRSSTKY DLRKSKRGFP CYGRKKIKYE FTESVYDSGD  360
QLSLETDSCA DTIKIHSKST MVKKASGGAK KKNKGHECPI CFRVFKSGQA LGGHKRSHFI  420
GSQDHRTLVI QQHHQVAHDM HTLIDLNLPA PIDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894290.0AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609660.0HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485678.10.0PREDICTED: uncharacterized protein LOC108856391
RefseqXP_018485686.10.0PREDICTED: uncharacterized protein LOC108856391
TrEMBLA0A3P5Y3B30.0A0A3P5Y3B3_BRACM; Uncharacterized protein
STRINGBo5g042720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein