PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6582_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 268aa    MW: 31379.5 Da    PI: 5.4462
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6582_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.4e-35271192103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e+++d+++++++sw++ g sfvv+d+++f+ ++Lp yFkh+nfaSFvRQLn+YgF+k++ ++         weF ++ F  g+++ll++ik
    RrC6582_p2  27 FLTKTFEMVDDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFASFVRQLNIYGFRKIEADR---------WEFMNEGFLMGQRDLLKSIK 114
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++s+
    RrC6582_p2 115 RRTSS 119
                   **875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-5323116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.43E-3324116IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-3624116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDPSSSSRAW SMPMPMEGLQ EPGPGPFLTK TFEMVDDPNT NHIVSWNRGG ISFVVWDPHS  60
FSATILPLYF KHNNFASFVR QLNIYGFRKI EADRWEFMNE GFLMGQRDLL KSIKRRTSSF  120
APPSLHRSQD DPSVELRQER HVLMMEISRL RQQEQRARGY IQAMEQRLNG AERKQRHMMS  180
FLRRVVKNPA LLQQLLEQQR KELEEASMDQ VKQETVGHVS ELDALALEMQ GHGRQRTEEV  240
ERELDDGFWE ELLMNKDEDE EEANVNIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-252712120125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373040.0AC237304.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116993.11e-171PREDICTED: heat stress transcription factor A-7b isoform X2
SwissprotQ9M1V51e-149HFA7B_ARATH; Heat stress transcription factor A-7b
TrEMBLA0A397Y2H41e-173A0A397Y2H4_BRACM; Uncharacterized protein
STRINGBra007739.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148361619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G63350.11e-144HSF family protein