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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC6544_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
Dof |
| Protein Properties |
Length: 331aa MW: 35782.4 Da PI: 9.8493 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC6544_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 122.6 | 1.3e-38 | 78 | 136 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
e alkcprCds ntkfCyynny+l+qPryfCk+CrryWt+GGalrnvPvGgg+r+n k+
RrC6544_p1 78 EGALKCPRCDSLNTKFCYYNNYNLTQPRYFCKGCRRYWTHGGALRNVPVGGGSRRNSKK 136
5689***************************************************9876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MVFSSNWSQP TNSNHQQHQL HENGSLVSGH GLLSHQLPPY PPNPNPNHHH AAASSGLPAR 60
LGASMAERAR QAKAPPPEGA LKCPRCDSLN TKFCYYNNYN LTQPRYFCKG CRRYWTHGGA 120
LRNVPVGGGS RRNSKKGKNG NSKSSSSLSK QSSSTVNAPS SSSGQLRTNH QFPFSPTLHN 180
LTQLGGIGLN LAATNGNNQA HQIGPSSMND LGFLHVGNER TGNIHDNNNS VQNNLMAAAG 240
SMNQFTLFDP ATTLYAFQNE GNIGISFSST SMVDSRAYHT APVKMEEQPS LVNLSIPVSS 300
LTPSGNQTSQ YFWNNSDLSG PSSNDHHHRL L
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250|UniProtKB:Q9M2U1, ECO:0000269|PubMed:16740150, ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:30626969}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:16740150}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ584285 | 1e-158 | FJ584285.1 Brassica rapa subsp. pekinensis OBF binding protein 2 Dof1.1-2 gene, partial cds. |
