PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6527_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 289aa    MW: 31642.2 Da    PI: 7.3231
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6527_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14142186347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
       RrC6527_p2 142 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 186
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.8292984IPR017884SANT domain
SMARTSM007172.4E-73082IPR001005SANT/Myb domain
CDDcd001672.06E-73379No hitNo description
SuperFamilySSF466894.95E-103387IPR009057Homeodomain-like
PROSITE profilePS5129420.491135191IPR017930Myb domain
SuperFamilySSF466894.16E-17137191IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-17138190IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.6E-12139185IPR009057Homeodomain-like
SMARTSM007173.2E-13139189IPR001005SANT/Myb domain
PfamPF002495.0E-13142186IPR001005SANT/Myb domain
CDDcd001671.82E-11142187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEILRPTTSH VSGGNWIMEE TKSNVATTRE VATWTAAENK AFENALAVYD DNTPDRWQKV  60
AAVIPGKTVS DVIRQYNELE ADVSSIEAGL IPVPGYITSP PFTLDWAGGG GGCNGFKPGH  120
PVGNKRSPAG RSPELERKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VITRTPTQVA  180
SHAQKYFIRQ HSGGKDKRRA SIHDITTVNL EDEASLETNK NSLVGREQHS RLGGFPWSQT  240
DNTGTHADAF NITIGNALSG VHSYGQALLG PFNTAADSCY DGQNAMFQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1634991176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00568DAPTransfer from AT5G58900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456365.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_018456366.10.0PREDICTED: transcription factor DIVARICATA
RefseqXP_018456367.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-105DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3P6EJV50.0A0A3P6EJV5_BRAOL; Uncharacterized protein
STRINGBo9g135730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.10.0Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]