PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC651_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 217aa    MW: 23996.8 Da    PI: 7.2323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC651_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-183585155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++ykGVr ++ +g+Wv+eIr p   +k++r++lg++ tae Aa+a++ a ++l+g
  RrC651_p3 35 KKYKGVRMRS-WGSWVSEIRAP---NKKTRIWLGSYSTAEAAARAYDVALLCLKG 85
               59*****998.**********9...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.1813693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-313695IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-203694IPR016177DNA-binding domain
SMARTSM003806.5E-353699IPR001471AP2/ERF domain
PfamPF008472.5E-113685IPR001471AP2/ERF domain
PRINTSPR003674.9E-93748IPR001471AP2/ERF domain
CDDcd000186.15E-283995No hitNo description
PRINTSPR003674.9E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVKQELKIKK EMSLSSPSQS SPSSSSPKIK KNKIKKYKGV RMRSWGSWVS EIRAPNKKTR  60
IWLGSYSTAE AAARAYDVAL LCLKGPQANL NFPSSASSHH LLDEMTILSP KSIQKIAAQA  120
ANNSSDLFAF SSSAASSPSD HDHHPDDDGM QSLIGSFVDN HVSLMNPSSS WYDNEHNGMF  180
FFDDGAPFNY SPLLNSTTNM VDAYFYEDAD IPLWSFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-153593160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-153398268ATERF1
3gcc_A9e-153398268ATERF1
5wx9_A4e-1436931472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449317.11e-156PREDICTED: ethylene-responsive transcription factor ERF012-like
SwissprotQ9SFE44e-96ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A078JS931e-111A0A078JS93_BRANA; BnaAnng29870D protein
TrEMBLA0A397YNU91e-111A0A397YNU9_BRACM; Uncharacterized protein
TrEMBLM4DIS31e-111M4DIS3_BRARP; Uncharacterized protein
STRINGBra016400.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.14e-87ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]