PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC6406_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 315aa MW: 35396.4 Da PI: 7.3247 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.7 | 2.4e-33 | 155 | 211 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp++v++tYeg+H+h RrC6406_p2 155 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 211 8******************************************************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 3.0E-113 | 1 | 315 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 7.0E-34 | 139 | 213 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 146 | 212 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.963 | 149 | 214 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-38 | 154 | 213 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.9E-26 | 155 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 315 aa Download sequence Send to blast |
MEFTSFHQAS LQSIWDFGEA ETDSLGFMEL LGSQNHSLLL ETLQPQTQPF EKMSSSELTI 60 LQAPPSKATA DNHVTSKVES LCSDINPPAT PNSSSISSAS SEAVNEEKSK REEDEEHQQK 120 KSDTNKQLKP KKNSQKRQRE ARVAFMTKSE VDHLEDGYRW RKYGQKAVKN SPFPRSYYRC 180 TTASCNVKKR VERSFRDPST VVTTYEGQHT HISPLTSRPI SSGGFFFGSS GVASNLGNFG 240 FPMESSTLMY PQFQQLVHFN QQQQQQELVP CFGGVGEYVI RHADAYGDDE RVKKSRGLVK 300 DNGLLQDVVP SHMLK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-28 | 144 | 214 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-28 | 144 | 214 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF430074 | 0.0 | KF430074.1 Brassica rapa WRKY transcription factor 68 (WRKY68) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434279.1 | 0.0 | PREDICTED: probable WRKY transcription factor 23 | ||||
Refseq | XP_018434303.1 | 0.0 | PREDICTED: probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 1e-140 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A0D3BNM5 | 0.0 | A0A0D3BNM5_BRAOL; WRKY transcription factor | ||||
TrEMBL | A0A3P6C2Q4 | 0.0 | A0A3P6C2Q4_BRAOL; WRKY transcription factor | ||||
STRING | Bo4g004680.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6152 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47260.1 | 1e-115 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
---|---|---|---|
|