PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC63_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 379aa    MW: 41738.7 Da    PI: 5.1492
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC63_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.33.5e-31155254197
    DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiWg 97 
               k+fqrl+se+Dei++L+G++df++++g +p++++daf+++vk  i+f++sk q+v+K++r KkKf + vk+     k++++++ sk+ dqk+f+ls+ iWg
  RrC63_p2 155 KMFQRLFSETDEIAMLRGFLDFTSTRG-DPYENMDAFCDYVKTLIDFNASKAQIVTKLQRCKKKFVNIVKNalkkGKTEDKVTCSKDLDQKAFDLSRNIWG 254
               58*************************.9************************************9999887777899999*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-25157254IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAPKQSDKIE NPPPAASSSE EEEEEEESGS SGEEEESGSS DDEAGDVQSK LTQKPPPPPT  60
KKNPESDSEE DESESDSDSE PPTKTKPLNT VASKPKPETS GSASVSLPES STTAKRSLKQ  120
ADEEEPKKKA KTTTENVKKK KDEEVKKISG EDAKKMFQRL FSETDEIAML RGFLDFTSTR  180
GDPYENMDAF CDYVKTLIDF NASKAQIVTK LQRCKKKFVN IVKNALKKGK TEDKVTCSKD  240
LDQKAFDLSR NIWGANGVLP AKPRKKSSKE DGKSPPSPSH TPKKMEKQKG VVVVDDAQLS  300
SSREMAMFFK AENVSVFGLD ESTVSAVWGM VEDGPKKREM EEKLKKLKAM QVELCLQRTA  360
LLDTTAKMIF KDNASSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131PKKKAKT
2126140KKKAKTTTENVKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471910.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB421e-103STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A3P6FL140.0A0A3P6FL14_BRAOL; Uncharacterized protein
STRINGBo1g039870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.16e-86DNA-binding storekeeper protein-related transcriptional regulator