PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6133_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 29690.6 Da PI: 9.6389 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.1 | 1.3e-51 | 18 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhP+d+elv++yL k+++++ + v+ evd++k+ePwd+p++++ + +ewyf+s++d+kyatg+r+nrat+sgyWkatgkd+++++ +g+l RrC6133_p3 18 LPPGFRFHPRDDELVCDYLMKRTARSLYQP-VVLIEVDLNKCEPWDIPQTARVGCREWYFYSQKDRKYATGQRTNRATASGYWKATGKDRAIHR-NGSL 114 79********************99988776.6899*************98888999*************************************9.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg++ktLvfykgrapkg ktdWvmhe+rl RrC6133_p3 115 VGMRKTLVFYKGRAPKGCKTDWVMHEFRL 143 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-59 | 10 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.192 | 18 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-26 | 19 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEVKEENKGS ISMVEANLPP GFRFHPRDDE LVCDYLMKRT ARSLYQPVVL IEVDLNKCEP 60 WDIPQTARVG CREWYFYSQK DRKYATGQRT NRATASGYWK ATGKDRAIHR NGSLVGMRKT 120 LVFYKGRAPK GCKTDWVMHE FRLHGTFLHH APNPLKEEWV LCRVFHKNNN EVNIDNNMRS 180 CSNQNASALM DSYINFDHHI NQQVPCFSNL NQTNQSGFDT KNPNPLSKPS SDQMVLRALL 240 SQLTKSGKKS QSYGERSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-53 | 14 | 169 | 11 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018461990.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 1e-114 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A398A0Z3 | 1e-177 | A0A398A0Z3_BRACM; Uncharacterized protein | ||||
STRING | Bra001480.1-P | 1e-178 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 1e-155 | NAC family protein |