PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6062_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 362aa    MW: 39945.3 Da    PI: 5.1687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6062_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-102923321055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  RrC6062_p1 292 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 332
                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14284349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-12287343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-12291336No hitNo description
PfamPF000101.4E-7292332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGEWSNNLGG MYTYATEEAD FMNQLLTSYD HPGTGSSTGT ASADHHGLYW SLGSHHNHLT  60
LMPEASSFCF SGESSSYSEY YAVAPPAVRE NNNGSMDFDM IDVTINTNSY LVGEETSECD  120
VEKYSSGKTR LPLGAVLETN DDQESMLQPE MSVTTTDHQK SLTGSKKRSR ATAADVSVTS  180
IYFLPDCIKI LQFTKNKKAK VGKRGQKSLE MSGDNSNGGE EEEREKVKKR KTGAIMSRQN  240
SSVTLCSEDE SHCPSQDAGG EDEDDASKAL NLNGKTRASR GAATDPQSLY ARKRRERINE  300
RLRILQNLVP NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDMWMYAPIA FNGMDIGLNS  360
SR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450133.10.0PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK00.0BH085_ARATH; Transcription factor bHLH85
TrEMBLM4F0J20.0M4F0J2_BRARP; Uncharacterized protein
STRINGBra034587.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-159ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]