PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6027_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 177aa MW: 19161.1 Da PI: 6.8864 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 185.8 | 3.3e-58 | 21 | 116 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqdrflPianvsrimkk+lPanakiskdaket+qecvsefisfvt+easdkcq+ekrktingddllwa++tlGfedyveplkvyl+++re+ege+ RrC6027_p3 21 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 116 89********************************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.1E-54 | 15 | 124 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.43E-41 | 23 | 133 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.9E-29 | 26 | 90 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 6.3E-21 | 54 | 72 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 57 | 73 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 6.3E-21 | 73 | 91 | No hit | No description |
PRINTS | PR00615 | 6.3E-21 | 92 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGDSDKDSGG GQNGQSALSP REQDRFLPIA NVSRIMKKAL PANAKISKDA KETMQECVSE 60 FISFVTGEAS DKCQKEKRKT INGDDLLWAM TTLGFEDYVE PLKVYLQRFR EIEGERGGLG 120 RPHTGGEAGE HQQDGGGFYG GGGMQYHQHH QFLHQQNHMN GSTGSGGGGA GSGRTRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 8e-49 | 21 | 111 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 8e-49 | 21 | 111 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183495 | 0.0 | AC183495.1 Brassica oleracea Contig A, complete sequence. | |||
GenBank | KC787660 | 0.0 | KC787660.1 Brassica napus transcription factor subunit NF-YB2A (NF-YB2A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013697087.1 | 1e-102 | nuclear transcription factor Y subunit B-2-like | ||||
Swissprot | Q9FGJ3 | 9e-83 | NFYB2_ARATH; Nuclear transcription factor Y subunit B-2 | ||||
TrEMBL | A0A3P6B3P7 | 2e-90 | A0A3P6B3P7_BRACM; Uncharacterized protein | ||||
TrEMBL | W6D5N3 | 2e-90 | W6D5N3_BRANA; Transcription factor subunit NF-YB2A | ||||
STRING | Bo2g133530.1 | 1e-90 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM255 | 28 | 229 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47640.1 | 1e-66 | nuclear factor Y, subunit B2 |
Publications ? help Back to Top | |||
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