PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5892_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 348aa    MW: 39781.4 Da    PI: 4.5563
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5892_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.5e-10205283276
                 EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                 +k+lt+sdv++++ l+lp+k +++         g   ++  ++++ ++g++ e+ +  +  ++++ lt GW++Fv + gLke
  RrC5892_p1 205 QKQLTTSDVNSRK-LSLPRKKFQQLldeteaaRGR--KEARVSVYGPDGKVHEMWVGDKTERSSFELTLGWRKFVVDYGLKE 283
                 79**********9.********8889888866333..4557*************9954555556****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-10201299IPR015300DNA-binding pseudobarrel domain
CDDcd100174.39E-13204295No hitNo description
SuperFamilySSF1019361.61E-13204299IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MASSTQDEQV HHRIRMEEDA LDDEHLNNEA KHEDDHKMAA SESETNEAEK QKVEPEAKHE  60
DDDKMAASES ETSEPEKQNV EPEAKDDDAK KIVASESATS EQEVKDAKQE DESRGGTMTT  120
TSPPRSLTQE EEEELREKAA RASAILLSMY YDAVPPKNPS VLEIDDHDED DSEQTLRFLT  180
RWKAPDLPPN KIIHQLIEQC SRPIQKQLTT SDVNSRKLSL PRKKFQQLLD ETEAARGRKE  240
ARVSVYGPDG KVHEMWVGDK TERSSFELTL GWRKFVVDYG LKECCDFITV WMFRRRDTQG  300
ICLAVDAIRF AFRKELVLTS VLVIRACDDQ EVITLLERQV IMVISFAC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467013.10.0PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A3P6C6M11e-123A0A3P6C6M1_BRAOL; Uncharacterized protein
STRINGBra005016.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1630655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-31B3 family protein