PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5795_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 382aa    MW: 41353.2 Da    PI: 9.1291
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5795_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.7e-20180229255
         AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+ ae Aa+a+++a+++++g
  RrC5795_p4 180 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDNAESAARAYDEAALRFRG 229
                 7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.0E-35180243IPR001471AP2/ERF domain
PROSITE profilePS5103225.106180237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-32180238IPR001471AP2/ERF domain
PfamPF008472.9E-13180229IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-22180238IPR016177DNA-binding domain
PRINTSPR003675.0E-11181192IPR001471AP2/ERF domain
CDDcd000182.41E-26188239No hitNo description
PRINTSPR003675.0E-11203219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MCALKVANQD DNVGKKAEPT TREDDHGTLS DIDQWLHLFA AENDHLHRDN SLTPPSSSLS  60
ISREKEMSAI VSALTHVVAG NVPTHQYGGG GSGGGEGASN SSSSSGQKRR REVEEGGGGK  120
AVIAANTLTV DQYLSGGSSS SRVGGASSNM SGSVPTYEYT TTTNANTETS SVNGDQPRRR  180
YRGVRQRPWG KWAAEIRDPF KAARVWLGTF DNAESAARAY DEAALRFRGN KAKLNFPENV  240
RLVRPASTAA TQPVLQRTVQ RPTQLRNSGS TSALLPIRPA SEQNVHSQPL MQSYNLSYSE  300
MVRQHHQQST NLYDPMLRFG QTGGLTMQST STSSSHSRPL FSPASVQPKP ESAGETGYLQ  360
DLQWSSDKAS NNYNDYNKDP SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22179240163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-22181240666ATERF1
3gcc_A5e-22181240666ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7138250.0JQ713825.1 Brassica juncea ethylene-responsive transcription factor ABR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455446.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
SwissprotQ9FGF81e-155ABR1_ARATH; Ethylene-responsive transcription factor ABR1
TrEMBLA0A0D3E2821e-172A0A0D3E282_BRAOL; Uncharacterized protein
STRINGBo9g018330.11e-173(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91182137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-124ERF family protein
Publications ? help Back to Top
  1. Choi DS,Hwang BK
    Proteomics and functional analyses of pepper abscisic acid-responsive 1 (ABR1), which is involved in cell death and defense signaling.
    Plant Cell, 2011. 23(2): p. 823-42
    [PMID:21335377]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Sanyal SK, et al.
    Arabidopsis CBL interacting protein kinase 3 interacts with ABR1, an APETALA2 domain transcription factor, to regulate ABA responses.
    Plant Sci., 2017. 254: p. 48-59
    [PMID:27964784]
  5. Choi SW,Lee SB,Na YJ,Jeung SG,Kim SY
    Arabidopsis MAP3K16 and Other Salt-Inducible MAP3Ks Regulate ABA Response Redundantly.
    Mol. Cells, 2017. 40(3): p. 230-242
    [PMID:28292003]