PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5777_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 101aa    MW: 11513.9 Da    PI: 8.6132
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5777_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000132244123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C+k Fs+   L  H+ +H
  RrC5777_p4 22 HQCKLCNKIFSSYQALGGHMTSH 44
                79******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.09E-71846No hitNo description
Gene3DG3DSA:3.30.160.606.2E-41845IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-112145IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7432249IPR007087Zinc finger, C2H2
SMARTSM003550.00712244IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MECSVSDDEI VTESGGKGDD VHQCKLCNKI FSSYQALGGH MTSHRMIKSK SKKSSREESV  60
DRDCEDDESV KKEKKMHRRC VANCSRTFYI NHLRGGGRKE R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475336.12e-50PREDICTED: uncharacterized protein LOC108846619
TrEMBLA0A3P6AQI66e-23A0A3P6AQI6_BRAOL; Uncharacterized protein
STRINGBra006302.1-P2e-19(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.11e-14C2H2 family protein