PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC574_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 21138.4 Da PI: 7.0478 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.1e-05 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H RrC574_p2 48 FPCQYCPRKFYTSQALGGHQNAH 70 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.26E-6 | 45 | 75 | No hit | No description |
PROSITE profile | PS50157 | 11.053 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MAEHPPPSSF HHHVACPPPP KHRSSSNYKK HSFPGSHHHQ PPTFNRLFPC QYCPRKFYTS 60 QALGGHQNAH KRERAAARRN LGVVDVVDVS HHPHHEAPSS VNLYDDSDAA FVCPDFYPNT 120 PHQGSVVTAT GSSWSVLPPD NHQQTTMMVG GGYVDPYCPP YPYPFGYPYG FIMEQEEHEP 180 QLDLSLHL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium. {ECO:0000269|PubMed:15240552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189564 | 7e-52 | AC189564.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009B23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018477026.1 | 1e-107 | PREDICTED: zinc finger protein KNUCKLES-like | ||||
Swissprot | Q9FFX4 | 1e-25 | KNU_ARATH; Zinc finger protein KNUCKLES | ||||
TrEMBL | A0A3P5ZYQ0 | 9e-63 | A0A3P5ZYQ0_BRAOL; Uncharacterized protein | ||||
STRING | Bra023444.1-P | 2e-56 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6966 | 20 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14010.1 | 9e-22 | C2H2 family protein |
Publications ? help Back to Top | |||
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