PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G14010.1 | ||||||||
Common Name | KNU, MAC12.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 161aa MW: 18049.1 Da PI: 7.1926 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.5e-05 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H AT5G14010.1 38 FPCQYCPRKFYTSQALGGHQNAH 60 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.66E-6 | 35 | 65 | No hit | No description |
PROSITE profile | PS50157 | 11.053 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MAEPPPSYLH FVGPAKTRSS SKRHSFSSSA HPASHRLFPC QYCPRKFYTS QALGGHQNAH 60 KRERAAARRN LGVLANSPPI LDDNNTFLRP YPCFYQNPFQ GSTSGNEPLQ EQPTMMTMDG 120 YDPFHPYPYV YPFALSGNNN DGGNGVMEED EPLDLDLSLR L |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145357995 | 0.0 | ||||
Expression Atlas | AT5G14010 | - | ||||
AtGenExpress | AT5G14010 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: First expressed in developing carpel primordia, and later in stamens and ovules of flower buds. {ECO:0000269|PubMed:15240552}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes KNUCKLES (KNU), a C2H2-type zinc finger protein with a conserved transcriptional repression motif. Mediates the repression of WUS in floral meristem determinacy control. | |||||
UniProt | May function as a transcriptional repressor of cellular proliferation that regulates floral determinacy and relative size of basal pattern elements along the proximo-distal axis of the developing gynoecium. {ECO:0000269|PubMed:15240552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G14010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Upstream Regulators) ? help Back to Top | ||||||
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Source | Upstream Regulator (A: Activate/R: Repress) | |||||
ATRM | AT4G18960 (A) |
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top | ||||||
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Source | Target Gene (A: Activate/R: Repress) | |||||
ATRM | AT2G17950(R) |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G14010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005230 | 0.0 | AB005230.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12. | |||
GenBank | AY612608 | 0.0 | AY612608.1 Arabidopsis thaliana KNUCKLES (KNU) mRNA, complete cds. | |||
GenBank | BT024703 | 0.0 | BT024703.1 Arabidopsis thaliana At5g14010 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_196905.1 | 1e-117 | C2H2 and C2HC zinc fingers superfamily protein | ||||
Swissprot | Q9FFX4 | 1e-118 | KNU_ARATH; Zinc finger protein KNUCKLES | ||||
TrEMBL | A0A384L1F1 | 1e-116 | A0A384L1F1_ARATH; KNU | ||||
TrEMBL | Q29Q53 | 1e-116 | Q29Q53_ARATH; At5g14010 | ||||
STRING | AT5G14010.1 | 1e-116 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6966 | 20 | 31 | Representative plant | OGRP82 | 15 | 137 |
Link Out ? help Back to Top | |
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Phytozome | AT5G14010.1 |
Entrez Gene | 831249 |
iHOP | AT5G14010 |
wikigenes | AT5G14010 |