PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC573_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 27367.3 Da PI: 6.6373 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.8 | 4.4e-36 | 6 | 138 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 p+GfrF+Ptd+e+v++yLk k ++ + +++evi++vdiy+++P +L + + ka+++++yfF+++ +y++g+r++r+tksg Wk+tg ++++++k RrC573_p5 6 PVGFRFRPTDDEIVDHYLKSKNKDGNtSHVDEVISTVDIYSFDPLELAsQsssTRKATDNDLYFFCRK--EYNRGERQSRKTKSGSWKKTGVTTNIMRKr 103 89*******************988874677788**************843444334466799****97..67789***********************98 PP NAM 96 .kgelvglkktLvfy..kgrapkgektdWvmheyr 127 ++e++g k+++vf k k+dWvmhey RrC573_p5 104 gDREKIGEKRVFVFQysKILGGAKPKSDWVMHEYV 138 87889*********844222333348********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-35 | 5 | 140 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.756 | 5 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-23 | 6 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MVDPHPVGFR FRPTDDEIVD HYLKSKNKDG NTSHVDEVIS TVDIYSFDPL ELASQSSSTR 60 KATDNDLYFF CRKEYNRGER QSRKTKSGSW KKTGVTTNIM RKRGDREKIG EKRVFVFQYS 120 KILGGAKPKS DWVMHEYVAT FVSLTQISSS ELHNPRQFTG FLHLEEETQI EDAIRRAINN 180 LSPHDLNCLL NNDYVDEEQG NTQEVSNALE TDTDTSEKKK INPYDDAQGK YDRSQKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-19 | 6 | 137 | 16 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013639075.1 | 3e-88 | PREDICTED: NAC domain-containing protein 5-like | ||||
Refseq | XP_022548551.1 | 4e-88 | NAC domain-containing protein 68-like | ||||
Swissprot | O81914 | 1e-52 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | M4EWX1 | 7e-87 | M4EWX1_BRARP; Uncharacterized protein | ||||
STRING | Bra033306.1-P | 1e-87 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 4e-55 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
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