PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5698_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 412aa    MW: 46091.9 Da    PI: 6.7527
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5698_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.1e-36281202103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ ++e++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF+++ F +g+k+ll++i 
    RrC5698_p2  28 FLSKTYDMVDDPLTDEVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPER---------WEFANEGFVRGQKNLLKSII 115
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rkk +
    RrC5698_p2 116 RKKPS 120
                   *9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.5E-3821112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.84E-3423117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.0E-5924117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.2E-3128117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGSICESVRT VNSSSASTKV VVNSVPPFLS KTYDMVDDPL TDEVVSWSSG NNSFVVWNVP  60
EFAKQFLPKY FKHNNFSSFV RQLNTYGFRK VDPERWEFAN EGFVRGQKNL LKSIIRKKPS  120
QVHLQKQPQV QHSSVGACVE VGKFGLEEEV ERLQRDKNIL MQELVRLRQQ QQVTEHHLQH  180
MGQKVHVMEQ RQQQMMSFLA KAVQSPGFLN QFSQQSSEGN PHISETNKKR RLPVEDQKNS  240
TSHGVNGLSG QIVRYQSSMN EATNSMLQQI QSMSCSGDHH HDPYAQADLL APRQGAAAAS  300
GSSNSDLVGC ETDNGECLVP KMAVLDESMI LGSVGAKNEL LPGGEHSLWE QFFGESTGIG  360
MTDELVSGSV DKEMIMEQLG LQSNLRNVLR NNQQMNHLTE QMGLLISDAL RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-262311724129Heat shock factor protein 1
5d5v_B2e-262311724129Heat shock factor protein 1
5d5v_D2e-262311724129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491796.10.0PREDICTED: heat stress transcription factor A-1e-like
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A397ZZQ70.0A0A397ZZQ7_BRACM; Uncharacterized protein
STRINGBra001071.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]