PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5686_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 349aa    MW: 38791.6 Da    PI: 4.7279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5686_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.3e-082763111050
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 
                 r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y
  RrC5686_p1 276 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHY 311
                 9******************97.....8*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.69266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-9268322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-7271311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-5272323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.61E-9275311No hitNo description
PfamPF000101.3E-5276311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSA GGDHQGLYWS HGSHHNHLTL  60
MPEANSFCFS GESSSYSVGN SGYYAVVPPP VEENNNGSMD FGMEDVTINT NSYLVGEETS  120
ECDVEKYSSG KTLLPLETVV ENHHEEDSIL QSEISVTTAD HHQKSVTGSR KRPRATSADK  180
NKRAKVGKRG QKIIEMSDDT NNGEEDEWEK VKKRKSGAMM SRQNSSTTFC SEEESQCPSQ  240
DVEGEEEEDA SKALNLNGKT RASRGAATDP QSLYARKRRE RINERLRILQ NLVPNGTKVD  300
ISTMLEEAVH YFTCTFMHVS YMSLLSSDDL WMYAPIAFNG MDIGLNSPR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461096.10.0PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK00.0BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A397L2S80.0A0A397L2S8_BRACM; Uncharacterized protein
TrEMBLM4F7A90.0M4F7A9_BRARP; Uncharacterized protein
STRINGBra036969.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-173ROOT HAIR DEFECTIVE 6-LIKE 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]