PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC5657_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 24751.3 Da PI: 4.6302 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.8e-19 | 32 | 82 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa+++++g RrC5657_p1 32 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALAIKG 82 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-13 | 32 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-37 | 33 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 33 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 33 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-22 | 34 | 92 | No hit | No description |
PRINTS | PR00367 | 8.6E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSTTDSVKQS SPVEEEHPRT NNNNKKRARP DPVYRGVRMR AWGKWVSEIR EPRKKSRIWL 60 GTFSTAEMAA RAHDAAALAI KGTSAVLNFP ELATYLPRPA SSSPRDVQAA AAVAAAMDFS 120 DPTTVVVPET QHLSPSSSYS TSTSSEEAAS STAEELSEIV ELPSLETSYD EPWSEFVYVD 180 SAYPPSSPWY FNNCYSFYYH SDENGTSMSE PFESANFGPL FPLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 34 | 90 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004260 | 1e-103 | AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence. | |||
GenBank | AY560875 | 1e-103 | AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-103 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ446437 | 1e-103 | DQ446437.1 Arabidopsis thaliana clone pENTR221-At1g77200 AP2 domain-containing transcription factor TINY (At1g77200) mRNA, complete cds. | |||
GenBank | DQ652938 | 1e-103 | DQ652938.1 Arabidopsis thaliana clone 0000016559_0000011559 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018459987.1 | 1e-125 | PREDICTED: ethylene-responsive transcription factor ERF037-like | ||||
Swissprot | O80654 | 1e-102 | ERF37_ARATH; Ethylene-responsive transcription factor ERF037 | ||||
TrEMBL | D7KUG7 | 1e-103 | D7KUG7_ARALL; Uncharacterized protein | ||||
STRING | XP_010471905.1 | 1e-106 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77200.1 | 2e-89 | ERF family protein |