PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G77200.1 | ||||||||
Common Name | ERF037, T14N5.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 26729.4 Da PI: 4.7463 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.6e-19 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +gy+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ ++g AT1G77200.1 41 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDAAALTIKG 91 79*****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-13 | 41 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.15E-22 | 41 | 101 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-22 | 42 | 100 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.143 | 42 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-36 | 42 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 43 | 54 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 43 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000033 | anatomy | fruit valve | ||||
PO:0000034 | anatomy | vascular system | ||||
PO:0000036 | anatomy | leaf vascular system | ||||
PO:0000039 | anatomy | shoot axis vascular system | ||||
PO:0000056 | anatomy | flower bud | ||||
PO:0004707 | anatomy | fruit dehiscence zone | ||||
PO:0005679 | anatomy | epidermis | ||||
PO:0006325 | anatomy | inflorescence node | ||||
PO:0009005 | anatomy | root | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009067 | anatomy | filament | ||||
PO:0009072 | anatomy | plant ovary | ||||
PO:0020128 | anatomy | leaf margin |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MTESSIISVK QSSPVPEEED HHHHQQDSHR TNTKKRVRSD PGYRGVRMRT WGKWVSEIRE 60 PRKKSRIWLG TFSTPEMAAR AHDAAALTIK GTSAVLNFPE LATYLPRPAS SSPRDVQAAA 120 AVAAAMDFSP SSSSLVVSDP TTVIAPAETQ LSSSSYSTCT SSSLSPSSEE AASTAEELSE 180 IVELPSLETS YDESLSEFVY VDSAYPPSSP WYINNCYSFY YHSDENGISM AEPFDSSNFG 240 PLFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 43 | 99 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18411396 | 0.0 | ||||
Genevisible | 264481_at | 0.0 | ||||
Expression Atlas | AT1G77200 | - | ||||
AtGenExpress | AT1G77200 | - | ||||
ATTED-II | AT1G77200 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00245 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G77200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G77200 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004260 | 0.0 | AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence. | |||
GenBank | AY560875 | 0.0 | AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_177844.1 | 1e-178 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | O80654 | 1e-179 | ERF37_ARATH; Ethylene-responsive transcription factor ERF037 | ||||
TrEMBL | A0A178WNI8 | 1e-177 | A0A178WNI8_ARATH; Uncharacterized protein | ||||
STRING | AT1G77200.1 | 1e-178 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT1G77200.1 |
Entrez Gene | 844056 |
iHOP | AT1G77200 |
wikigenes | AT1G77200 |
Publications ? help Back to Top | |||
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