PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC558_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 29208.7 Da PI: 4.1925 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.2 | 2.5e-10 | 7 | 33 | 20 | 48 |
TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48 G++ W+ Iar+++ +Rt++++k++w+++l RrC558_p5 7 GNK-WSVIARHLP-KRTDNEIKNYWNTHL 33 888.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.903 | 1 | 37 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 2 | 34 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.56E-9 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-8 | 3 | 33 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.49E-8 | 8 | 33 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MLHASRGNKW SVIARHLPKR TDNEIKNYWN THLKKRLLDQ GIDPLTHKPL ASNPEPATPK 60 TSDFQDDSNP SNLDEQSHSG SMSPKSLHLS SGSCNSEETP RNYGSLKSKK PSSTSELLNK 120 VATRAASMGN IISASMEGTL IPSTTLSQPC LNDGFSETSQ FQMDELDPFS NSSEYIDHMK 180 EDICMNFDLN NSDYDFSQFL EQFNNDAAEE ADDIIGYDQD LLLSDDVSST SVDEDSMMRN 240 LTDWSNYLLD DSDFSHDTNQ D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a minor rheostat role in aliphatic glucosinolates (GLSs) biosynthesis, mostly short chained. Together with MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate biosynthesis but represses indolic glucosinolate biosynthesis. Prevents insect performance (e.g. lepidopteran insect Mamestra brassicae) by promoting glucosinolates. {ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:23943862}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by gibberellic acid (GA), jasmonic acid (JA, MeJA), nitrogen starvation and UV LIGHT treatment. Transiently repressed by salicylic acid (SA). Accumulates upon mechanical stimuli (e.g. wounding) in inflorescence. Down-regulated by sulfur-deficient stress. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18042203, ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX316032 | 0.0 | JX316032.1 Brassica juncea R2R3 DNA binding transcription factor MYB29-2 (MYB29-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018473209.1 | 0.0 | PREDICTED: transcription factor MYB29-like | ||||
Swissprot | Q9FLR1 | 1e-101 | MYB29_ARATH; Transcription factor MYB29 | ||||
TrEMBL | S4TB34 | 1e-166 | S4TB34_BRAJU; R2R3 DNA binding transcription factor MYB29-2 | ||||
STRING | Bra005949.1-P | 1e-136 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3787 | 18 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07690.1 | 2e-91 | myb domain protein 29 |