PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5581_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 388aa    MW: 44535.4 Da    PI: 5.3586
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5581_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34171082102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l+++i+
    RrC5581_p1  17 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQPHLMKNIH 104
                   9**************************************************************99988.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    RrC5581_p1 105 RRKP 108
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.94E-3512106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-6313106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-3714106IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.9E-191740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-3117106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-195567IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDESTHGGSS SSSLPPFLTK TYEMVDDSSS DSIVSWSQSN KSFIVWNPPE FSRDLLPRFF  60
KHNNFSSFIR QLNTYGFRKA DPEQWEFAND DFVRGQPHLM KNIHRRKPVH SHSLPNLQSQ  120
QSPLTDSERQ RMNNQIERLT KEKQVLLEEL HKQEEERELF EQQVKKLKDR LQRMEKRQRT  180
MVSSVSQVLE KPELALNLSP CLPETNERKR RFPRVGLEHQ TCGVAREEGS TSTSSHDATT  240
EHQVERLESS LAVWENLVSD SCESMEQQST RNMMTLDVDE SSTCPESPPL SCIQLSIDIR  300
LKSPPSPRTI DMNSEPDVSK EQNSVAPAPL APAAGANDVF WQQLLTENPG STEQREVQSE  360
KAEDRNEKCW WNSRNVNTIT EQLGHLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-24710619129Heat shock factor protein 1
5d5v_B8e-24710619129Heat shock factor protein 1
5d5v_D8e-24710619129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4352410.0HQ435241.1 Brassica napus cultivar Deyou No.5 heat shock transcription factor A4a (HsfA4a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485002.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494030.0HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A3P6ERE60.0A0A3P6ERE6_BRAOL; Uncharacterized protein
STRINGBo7g106320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.10.0heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]