PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC5577_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 234aa MW: 25974 Da PI: 5.1752

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5577_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60	5.7e-19	58	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g RrC5577_p1 58 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 108 68***998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.9E-13	58	108	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.4E-32	59	117	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.96E-21	59	117	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.446	59	116	IPR001471	AP2/ERF domain
SMART	SM00380	5.6E-37	59	122	IPR001471	AP2/ERF domain
CDD	cd00018	4.32E-32	60	118	No hit	No description
PRINTS	PR00367	2.4E-10	60	71	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-10	82	98	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MVASASESRS VEEYYSRQAE RVAQLPNSAS DLATDESKAE QNENSKKTKR VRDSGKHPVY 60 RGVRMRSWGK WVSEIREPRK KSRIWLGTFP TPEMAARAHD VAALSIKGTS AILNFPELAA 120 SFPRPVSLNP RDIQTAALKA AHMEPTTSFT SSTSSLESLV MVMDLSKTES EELDEIVELP 180 SLGSNCDVHS ASFGKEFVFS DSVDYCLYPP PWGQWSEDSY GISPSFNNGL SWDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-19	57	116	12	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443893.1	1e-161	PREDICTED: dehydration-responsive element-binding protein 3-like
Refseq	XP_018443894.1	1e-161	PREDICTED: dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	1e-118	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A397XS69	1e-145	A0A397XS69_BRACM; Uncharacterized protein
STRING	Bra008952.1-P	1e-145	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-115	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]