PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5338_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 226aa    MW: 25322.4 Da    PI: 6.5025
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5338_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-131463148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++ +   g+W++ +++     gRt++++k+ w+++l
       RrC5338_p1 14 KGSWTPEEDEILVEYIMKNSHGSWRLLPKKAAqlPGRTDNDIKNLWNTHL 63
                     799**************************999999************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-22570IPR009057Homeodomain-like
SuperFamilySSF466898.61E-15872IPR009057Homeodomain-like
PROSITE profilePS5129418.043967IPR017930Myb domain
SMARTSM007172.2E-101365IPR001005SANT/Myb domain
PfamPF002491.2E-111463IPR001005SANT/Myb domain
CDDcd001675.24E-101663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRKPCCDKQ GLKKGSWTPE EDEILVEYIM KNSHGSWRLL PKKAAQLPGR TDNDIKNLWN  60
THLKKRMLRM GLDPKTHEPL PSYALAMQAP SSQTTRHMAQ WESARLEAEA RLSRESLLFN  120
PSCGEVVKYE CDHFLRIWNS EIGESFRNIG VSSSTTTSQS PCSRTTSSSN APVGKECVMG  180
THHGSDSSSS PCSNNVEDVL SDSALQFLLD FPISDDDMSF LEREHC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104296.11e-125PREDICTED: protein ODORANT1-like
RefseqXP_009104297.11e-125PREDICTED: protein ODORANT1-like
SwissprotQ9M2D91e-105MYB17_ARATH; Transcription factor MYB17
TrEMBLM4CGW01e-124M4CGW0_BRARP; Uncharacterized protein
STRINGBra003443.1-P1e-125(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-92myb domain protein 17