PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5310_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 423aa    MW: 48594.1 Da    PI: 8.488
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5310_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000672143123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C++Cg s s k++ ++Hi++H
  RrC5310_p2 21 YLCQYCGISRSKKYLITSHINSH 43
                56********************6 PP
2zf-C2H218.36.3e-066890123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C  Cg  F+ + +Lk+H+++H
  RrC5310_p2 68 HSCLECGAEFKKPAHLKQHMQSH 90
                79*******************99 PP
3zf-C2H216.91.8e-05135159123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C   dC+ s++rk++L+rH+ tH
  RrC5310_p2 135 FECYvdDCTSSYRRKDHLNRHLLTH 159
                 789999*****************99 PP
4zf-C2H222.13.8e-07228251223
                 EET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                 +C+   Cgk F+ +s+L++H+ +H
  RrC5310_p2 228 VCKeiGCGKAFKYPSQLQKHQDSH 251
                 79999****************998 PP
5zf-C2H218.55.6e-06317342123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 +kC+   C+  Fs  snL++Hi+  H
  RrC5310_p2 317 FKCEvkGCSSAFSKASNLQKHIKAvH 342
                 89********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355252143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3026895IPR007087Zinc finger, C2H2
SMARTSM003550.00666890IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-46893IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SuperFamilySSF576673.31E-6133161No hitNo description
Gene3DG3DSA:3.30.160.604.5E-8133161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.889135164IPR007087Zinc finger, C2H2
SMARTSM003550.2135159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137159IPR007087Zinc finger, C2H2
SuperFamilySSF576673.79E-5162190No hitNo description
PROSITE profilePS501579.577164194IPR007087Zinc finger, C2H2
SMARTSM003550.46164189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166189IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-5222253No hitNo description
Gene3DG3DSA:3.30.160.601.1E-6222251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.72227256IPR007087Zinc finger, C2H2
SMARTSM003550.0028227251IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229251IPR007087Zinc finger, C2H2
SMARTSM003550.24259284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-4261282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280261284IPR007087Zinc finger, C2H2
SMARTSM0035522287308IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.1E-9298355No hitNo description
Gene3DG3DSA:3.30.160.607.7E-8298339IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.986317347IPR007087Zinc finger, C2H2
SMARTSM003558.7E-4317342IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280319342IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-4341371IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.3348374IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280350374IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGEEATNVDT KPSKAKDIRH YLCQYCGISR SKKYLITSHI NSHHKMEVEM ERDEEACEVD  60
EEEVSGRHSC LECGAEFKKP AHLKQHMQSH SLESYLLYCV RHWIPKRVNS KMRGYMLWTS  120
IRVGRPPEKL LLRPFECYVD DCTSSYRRKD HLNRHLLTHK GKLFKCPVEN CKSEFSVHGN  180
VSRHVKKFHS KDDGDKDNTV TGDSSNKEDT GHGETQSSDC STGQKKLVCK EIGCGKAFKY  240
PSQLQKHQDS HVKLDSIEAF CSEPGCMKYF TNEECLKAHI RSSHQHINCE ICGSKHLKKN  300
IKRHLRTHEE ESSPGEFKCE VKGCSSAFSK ASNLQKHIKA VHEDIRPFVC GFSGCGMRYA  360
YKHVRNNHEK SGSHIYTCGD FVEADEDFTS RPRGGVKRKH VTAEMLIKKR VMLPQFDSEE  420
HKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gli_A7e-112293684154PROTEIN (FIVE-FINGER GLI)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691614.10.0transcription factor IIIA-like
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A398AH350.0A0A398AH35_BRACM; Uncharacterized protein
TrEMBLM4CUV90.0M4CUV9_BRARP; Uncharacterized protein
STRINGBra008004.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA