PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5275_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 163aa    MW: 19337.5 Da    PI: 10.6652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5275_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000251946330
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
         HLH  3 rahnerErrRRdriNsafeeLrellPka 30
                +  n rE+ RR r+++ f+ L +++ + 
  RrC5275_p1 19 EQRNLREKERRMRMKHLFFMLSSHVSPT 46
                5679*******************99774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.6741665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-101683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-61884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MRRQRGREIG EGSSMSWKEQ RNLREKERRM RMKHLFFMLS SHVSPTHRLS VPQLIDHSAS  60
YMIQLKEKVN NLREKKQTLL GEVENHSEGS TSFNLPKLSI YSQGSIIKMN LIMDLNIKRV  120
MLHELVSVFE EEGAQVMISL TQSQLRYVLA RIHSYMYKYK HMR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227LREKER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487203.15e-96PREDICTED: uncharacterized protein LOC108857688 isoform X1
SwissprotQ9XIJ11e-61BH168_ARATH; Transcription factor bHLH168
TrEMBLA0A3P5YCK22e-84A0A3P5YCK2_BRACM; Uncharacterized protein
STRINGBo5g012060.13e-81(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.15e-64bHLH family protein