PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC522_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 280aa    MW: 30782.9 Da    PI: 4.9614
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC522_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.2e-14146191255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                gy+GVr++++     AeIrdp+    r +r++lg+f tae+Aa+a+++a+  ++g
  RrC522_p7 146 GYRGVRQRPW-----AEIRDPK----RaTRVWLGTFETAEDAARAYDRAAIGFRG 191
                8********7.....8****83....57*********************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-16146200IPR016177DNA-binding domain
PROSITE profilePS5103219.493146199IPR001471AP2/ERF domain
PfamPF008471.1E-7146190IPR001471AP2/ERF domain
SMARTSM003804.0E-30146205IPR001471AP2/ERF domain
PRINTSPR003671.8E-9147158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-26147199IPR001471AP2/ERF domain
CDDcd000184.02E-17147199No hitNo description
PRINTSPR003671.8E-9165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MHYPNNRPEF VGAPPSDRDL TRTRYPYQEQ LSPEQELSVI VSALQHVISG ENETAPYQGF  60
SSTDSTVISA GMPRSDSDTC QVCRIDGCLG CNYFFAPNQR IENRQQQQVE VEEEEGISSS  120
RRESPVAGKK AEGGGKVRKR KNKKNGYRGV RQRPWAEIRD PKRATRVWLG TFETAEDAAR  180
AYDRAAIGFR GPRAKLNFPF MDYTSSTSSP VAADDVGTSG SVNASASTTS VSAADSAETE  240
QWRGGGGDCD MDEYLKMMMM MDFGSGDSSD SGNTIADMFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19143200264ATERF1
3gcc_A1e-19143200264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453168.11e-144PREDICTED: ethylene-responsive transcription factor ERF109
SwissprotQ9SZ061e-118EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLV4MBC11e-140V4MBC1_EUTSA; Uncharacterized protein
STRINGXP_006412231.11e-141(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.16e-81redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]