PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5155_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 150aa    MW: 16266 Da    PI: 6.4995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5155_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.5e-171161155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                s+ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a  +l++
  RrC5155_p2 11 SKYKGIRRRK-WGKWVSEIRVPGT---RDRLWLGSFSTAEGAAVAHDVAFYCLHQ 61
                89*****998.**********943...5*********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-171172IPR016177DNA-binding domain
CDDcd000181.33E-271173No hitNo description
PfamPF008471.6E-81159IPR001471AP2/ERF domain
PROSITE profilePS5103221.3511271IPR001471AP2/ERF domain
SMARTSM003801.5E-301277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-251272IPR001471AP2/ERF domain
PRINTSPR003677.2E-91324IPR001471AP2/ERF domain
PRINTSPR003677.2E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDCRDSSESQ SKYKGIRRRK WGKWVSEIRV PGTRDRLWLG SFSTAEGAAV AHDVAFYCLH  60
QPNSLESLNF PHLLPPYIAA NTSPRSIQQA ASNAGMAVDA GIVHSNGVSG NSGCGDTTAY  120
CGNGGEVMEP LNISVYDYLD GHDHVWSSSF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437527.11e-110PREDICTED: ethylene-responsive transcription factor ERF019-like
SwissprotO805422e-84ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLA0A078GH191e-103A0A078GH19_BRANA; BnaA07g10270D protein
STRINGBo7g057680.11e-103(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.16e-87ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]