PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5040_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 292aa    MW: 32462.7 Da    PI: 6.9089
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5040_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.99.1e-33150207259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  RrC5040_p1 150 EDGYRWRKYGQKAVKNSQFPRSYYRCTNTRCTVKKRVERSSEDPSIVITTYEGQHCHQ 207
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-33134208IPR003657WRKY domain
SuperFamilySSF1182904.84E-28141207IPR003657WRKY domain
PROSITE profilePS5081128.506144209IPR003657WRKY domain
SMARTSM007744.4E-38149208IPR003657WRKY domain
PfamPF031061.2E-25150207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNDPKDPDLS NDSAWRELTA SDSDFFYRDT SNILLSDFAW NLPASSGFAQ TAVVPSSITT  60
TTTSKTDQPI PPSSCSSSAA AASVTVTEVS TNFNNPTAAT SSSSEDPTEN STASAAQTPE  120
TPKKEKKKAQ KRIRQQRFAF MTKSDVDNLE DGYRWRKYGQ KAVKNSQFPR SYYRCTNTRC  180
TVKKRVERSS EDPSIVITTY EGQHCHQTVG FPRGGIFPAH EPHNFTSHHH LPPPLPNHYY  240
YQELLHQIHR ENTSLPQLPQ STTEDGHVAV SSINPSEEGL LGDIVPQTMR NP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-24139206774Probable WRKY transcription factor 4
2lex_A3e-24139206774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931340.0KM593134.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442550.10.0PREDICTED: probable WRKY transcription factor 57
SwissprotQ9C9831e-123WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLA0A078F2N31e-163A0A078F2N3_BRANA; BnaA07g24310D protein
TrEMBLA0A397YR401e-163A0A397YR40_BRACM; Uncharacterized protein
STRINGBra004002.1-P1e-149(Brassica rapa)
STRINGBo6g095590.11e-149(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49952753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.21e-109WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]