PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC501_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 403aa    MW: 45017.9 Da    PI: 7.3477
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC501_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.95.3e-32176275298
     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiWg 97 
                lfqrl+se+Dei++LqG++df++++g +p++++daf+++vk  i+f++sk q+v+K++r KkKf + vk+     k++++++ +k+ dqk+fels+kiWg
  RrC501_p7 176 LFQRLFSETDEIAMLQGFLDFTSTKG-DPYENMDAFCDYVKTLIDFNASKAQIVTKLQRCKKKFANIVKNalkkGKTEDKITCAKDLDQKAFELSRKIWG 274
                69************************.9*************************************999888777899999*******************9 PP

     DUF573  98 s 98 
                s
  RrC501_p7 275 S 275
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-26177274IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDLMAERAYY YLRLVTWALG EADKQADKIE NPPVASSSEE EEEESGSSRE ESESSDEEAG  60
DVQSKLTQKP VAPPVSAAKK PESDSEEGES ESESDSDSEP ATKTKPLNTV VTKPIPPESS  120
TAAKRSLKQA DNNNEPKKKA KTSSTTEQVK KKKPTTTTKD EDVKKKISGE EAKKMLFQRL  180
FSETDEIAML QGFLDFTSTK GDPYENMDAF CDYVKTLIDF NASKAQIVTK LQRCKKKFAN  240
IVKNALKKGK TEDKITCAKD LDQKAFELSR KIWGSDGVLP AKPRKKKLSK EDELLSSTPK  300
KEVVKVEKTQ KVMNAVVVDT HHLSESREMG LFFKAENVSV MGLDESTVSG VWDRVEDGAK  360
KREMEEKLKK LKAKQMELFL QRTALVDYTA KMIFKNYASS SSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141PKKKAKT
2136152KKKAKTSSTTEQVKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466313.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB429e-98STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A0D3DG061e-170A0A0D3DG06_BRAOL; Uncharacterized protein
STRINGBo7g110050.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.13e-74DNA-binding storekeeper protein-related transcriptional regulator