PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4949_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 227aa    MW: 25311 Da    PI: 6.8001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4949_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-174292155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ykGVr +  +g+Wv+eIr p   ++++r++lg++ tae Aa+a++ a ++l+g
  RrC4949_p1 42 KKYKGVRMRT-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDVALLCLKG 92
                59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-114392IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3043101IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2043102IPR016177DNA-binding domain
SMARTSM003803.8E-3643106IPR001471AP2/ERF domain
PROSITE profilePS5103222.06243100IPR001471AP2/ERF domain
PRINTSPR003676.0E-94455IPR001471AP2/ERF domain
CDDcd000181.29E-2846102No hitNo description
PRINTSPR003676.0E-96682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVKQEPKTQT SSKKENSLSS PSHSSSSSST SLKIKNKKNK IKKYKGVRMR TWGSWVSEIR  60
APNQKTRIWL GSYSTAEAAA RAYDVALLCL KGPRANLNFP ASSYSLSQHL LDEKTLLSPK  120
SIQRVAAQAA NSSFDLLSPS SSTSSSPSDQ EQHHDDNDDD GMQSLIGSFI DSHVSLIDPS  180
SSWYGDEHNG LFSYDDVAPF NYSPQLNSMM VEEYYYEDAY IPLWNFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1542100160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0134824e-91AC013482.2 Genomic sequence for Arabidopsis thaliana BAC T26F17 from chromosome I, complete sequence.
GenBankAK1766794e-91AK176679.1 Arabidopsis thaliana mRNA for TINY like protein, complete cds, clone: RAFL25-22-A03.
GenBankAY0859254e-91AY085925.1 Arabidopsis thaliana clone 19721 mRNA, complete sequence.
GenBankBT0246164e-91BT024616.1 Arabidopsis thaliana At1g21910 mRNA, complete cds.
GenBankCP0026844e-91CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013695253.11e-119ethylene-responsive transcription factor ERF012-like
SwissprotQ9SFE41e-90ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A3P6ETZ41e-117A0A3P6ETZ4_BRAOL; Uncharacterized protein
STRINGBra036022.1-P1e-117(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.19e-82ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]