PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4930_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 28780.5 Da PI: 9.5275 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 82 | 132 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f taeeAa a+++a++k++ge RrC4930_p1 82 LYRGVRQRH-WGKWVAEIRLPKT---RTRLWLGTFETAEEAALAYDQAARKIRGE 132 59******9.**********965...4**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.51E-35 | 81 | 141 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-22 | 82 | 140 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-33 | 82 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-39 | 82 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 82 | 139 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-14 | 83 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 83 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MKVVTSSSSF PSSSKQEPLT PNNQTGPIGL NQLTPTQILQ IQRELHLRQN QARRRGSAHN 60 LHLLNAKPTL MKKTDVSKPV KLYRGVRQRH WGKWVAEIRL PKTRTRLWLG TFETAEEAAL 120 AYDQAARKIR GENARLNFPN NRDYKQTLSP TVNAKIESIF NTSDLPLHEL KTPAKTEEEF 180 FGFHYTGPKP DREREFSEMF GYGLGSSLES DITLLDLSSE WVKEDESFCM GLQKYPSFEI 240 DWDAIDKLSG SV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-20 | 81 | 139 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-20 | 81 | 139 | 4 | 63 | ATERF1 |
3gcc_A | 6e-20 | 81 | 139 | 4 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438564.1 | 1e-172 | PREDICTED: ethylene-responsive transcription factor ERF057-like | ||||
Refseq | XP_018438565.1 | 1e-172 | PREDICTED: ethylene-responsive transcription factor ERF057-like | ||||
Swissprot | Q9FJQ2 | 1e-112 | ERF57_ARATH; Ethylene-responsive transcription factor ERF057 | ||||
TrEMBL | A0A078HAW4 | 1e-153 | A0A078HAW4_BRANA; BnaC02g43540D protein | ||||
STRING | Bo00615s260.1 | 1e-153 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13499 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65130.1 | 1e-104 | ERF family protein |
Publications ? help Back to Top | |||
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